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Inst Reports – Überblick über Publikationen der/des IBG-1 für das Berichtsjahr 2022

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Die Publikationen in den Abschnitten A und B sind alle Text-Publikationen, die für die Programmberichte bzw. den Zentrenfortschrittsbericht für das Jahr 2022 gemeldet werden. Diese Liste kann nicht mehr geändert werden. Jülicher Autoren sind fett gedruckt.

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A. ISI/Scopus-referierte Publikationen

Hierzu zählen Publikationen in Journals, die entweder in der Master Journal List „Web of Science Core Collection“ von Clarivate Analytics oder in der „Scopus Source List“ von Elsevier gelistet sind.

Anzahl zählbare Publikationen: 56

TitelAutorenJournal/KonferenzPOFandere Institutezuletzt geändert
A manually curated compendium of expression profiles for the microbial cell factory Corynebacterium glutamicumKranz, Angela; Polen, Tino; Kotulla, Christian; Arndt, Annette; Bosco, Graziella; Bussmann, Michael; Chattopadhyay, Ava; Cramer, Annette; Davoudi, Cedric-Farhad; Degner, Ursula; Diesveld, Ramon; Freiherr von Boeselager, Raphael; Gärtner, Kim; Gätgens, Cornelia; Georgi, Tobias; Geraths, Christian; Haas, Sabine; Heyer, Antonia; Hünnefeld, Max; Ishige, Takeru; Kabus, Armin; Kallscheuer, Nicolai; Kever, Larissa; Klaffl, Simon; Kleine, Britta; Kočan, Martina; Koch-Koerfges, Abigail; Kraxner, Kim J.; Krug, Andreas; Krüger, Aileen; Küberl, Andreas; Labib, Mohamed; Lange, Christian; Mack, Christina; Maeda, Tomoya; Mahr, Regina; Majda, Stephan; Michel, Andrea; Morosov, Xenia; Müller, Olga; Nanda, Arun M.; Nickel, Jens; Pahlke, Jennifer; Pfeifer, Eugen; Platzen, Laura; Ramp, Paul; Rittmann, Doris; Schaffer, Steffen; Scheele, Sandra; Spelberg, Stephanie; Schulte, Julia; Schweitzer, Jens-Eric; Sindelar, Georg; Sorger-Herrmann, Ulrike; Spelberg, Markus; Stansen, Corinna; Tharmasothirajan, Apilaasha; Ooyen, Jan van; van Summeren, Philana; Vogt, Michael; Witthoff, Sabrina; Zhu, Lingfeng; Eikmanns, Bernhard J.; Oldiges, Marco; Schaumann, Georg; Baumgart, Meike; Brocker, Melanie; Eggeling, Lothar; Freudl, Roland; Frunzke, Julia; Marienhagen, Jan; Wendisch, Volker F.; Bott, MichaelScientific data 2171 IBG-4 22.2.2023
Physiological, Biochemical, and Structural Bioinformatic Analysis of the Multiple Inositol Dehydrogenases from Corynebacterium glutamicumRamp, Paul; Pfleger, Christopher; Dittrich, Jonas; Mack, Christina; Gohlke, Holger; Bott, MichaelMicrobiology spectrum 5111, 2171, 2172, 5241 IBG-4, IBI-7, JSC 27.1.2023
Identification and Characterization of the Haloperoxidase VPO-RR from Rhodoplanes roseus by Genome Mining and Structure-Based Catalytic Site MappingPorta, Nicola; Fejzagić, Alexander Veljko; Dumschott, Kathryn; Paschold, Beatrix; Usadel, Björn; Pietruszka, Jörg; Classen, Thomas; Gohlke, HolgerCatalysts 2171, 5111, 5241 IBG-4, IBI-7, IBOC, JSC 27.1.2023
Enzymatic C3-Methylation of Indoles Using Methyltransferase PsmD─Crystal Structure, Catalytic Mechanism, and Preparative ApplicationsAmariei, Diana A.; Pozhydaieva, Nadiia; David, Benoit; Schneider, Pascal; Classen, Thomas; Gohlke, Holger; Weiergräber, Oliver H.; Pietruszka, JörgACS catalysis 2171, 5241 IBG-4, IBI-7, IBOC 23.1.2023
microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentationScherr, Tim; Seiffarth, Johannes; Wollenhaupt, Bastian; Neumann, Oliver; Schilling, Marcel P.; Kohlheyer, Dietrich; Scharr, Hanno; Nöh, Katharina; Mikut, RalfPLOS ONE 2171, 5112 IAS-8 17.1.2023
N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyonKuang, Weiqi; Sanow, Stefan; Kelm, Jana M; Müller Linow, Mark; Andeer, Peter; Kohlheyer, Dietrich; Northen, Trent; Vogel, John P; Watt, Michelle; Arsova, BorjanaThe journal of experimental botany 2171 IBG-2 12.1.2023
A pseudokinase version of the histidine kinase ChrS promotes high heme tolerance of Corynebacterium glutamicumKrüger, Aileen; Frunzke, JuliaFrontiers in microbiology 2171 11.1.2023
Characteristics of the GlnH and GlnX Signal Transduction Proteins Controlling PknG-Mediated Phosphorylation of OdhI and 2-Oxoglutarate Dehydrogenase Activity in Corynebacterium glutamicumSundermeyer, Lea; Bosco, Graziella; Gujar, Srushti; Brocker, Melanie; Baumgart, Meike; Willbold, Dieter; Weiergräber, Oliver H.; Bellinzoni, Marco; Bott, MichaelMicrobiology spectrum 5244 IBI-7 23.12.2022
Antiphage small molecules produced by bacteria – beyond protein-mediated defensesHardy, Aël; Kever, Larissa; Frunzke, JuliaTrends in microbiology 2171 23.12.2022
Phylogenetic survey of the subtilase family and a data-mining-based search for new subtilisins from BacillaceaFalkenberg, Fabian; Bott, Michael; Bongaerts, Johannes; Siegert, PetraFrontiers in microbiology 2171 22.12.2022
Immobilization of 2‐Deoxyribose‐5‐phosphate Aldolase on Membrane Supports by Spray‐Coating: Optimization by Design‐of‐ExperimentFischer, Thilo; Sperling, Marcel; Rosencrantz, Sophia; Wäscher, Martin; Pietruszka, Jörg; Reinicke, StefanChemCatChem 2171 IBOC 16.12.2022
The Crystal Structure of the Defense Conferring Rice Protein OsJAC1 Reveals a Carbohydrate Binding Site on the Dirigent-like DomainHuwa, Nikolai; Weiergräber, Oliver H.; Fejzagić, Alexander V.; Kirsch, Christian; Schaffrath, Ulrich; Classen, ThomasBiomolecules 5241, 2171 IBI-7, IBOC 16.12.2022
Catalytically Active Inclusion Bodies─Benchmarking and Application in Flow ChemistryÖlçücü, Gizem; Baumer, Benedikt; Küsters, Kira; Möllenhoff, Kathrin; Oldiges, Marco; Pietruszka, Jörg; Jaeger, Karl-Erich; Krauss, UlrichACS synthetic biology 2171 IBOC, IMET 16.12.2022
Optimized prodigiosin production with Pseudomonas putida KT2440 using parallelized noninvasive online monitoringBrehl, Carl; Brass, Hannah; Lüchtrath, Clara; Böckmann, Lukas; Ihling, Nina; Classen, Thomas; Pietruszka, Jörg; Büchs, JochenBiotechnology progress 2172 IBOC 16.12.2022
Simple Enzyme Immobilization for Flow Chemistry? An Assessment of Available Strategies for an Acetaldehyde-Dependent AldolaseWäscher, Martin; Classen, Thomas; Pietruszka, JörgMolecules 2171 IBOC 16.12.2022
Jahresrückblick Organische Chemie: NaturstofftotalsyntheseGanardi, Ruth Christine; Pietruszka, JörgNachrichten aus der Chemie 2171 IBOC 16.12.2022
Recent Advances in Biocatalysis for Drug SynthesisKinner, Alina; Nerke, Philipp; Siedentop, Regine; Steinmetz, Till; Classen, Thomas; Rosenthal, Katrin; Nett, Markus; Pietruszka, Jörg; Lütz, StephanBiomedicines 2171 IBOC 16.12.2022
Control of parallelized bioreactors II: probabilistic quantification of carboxylic acid reductase activity for bioprocess optimizationden Eichen, Nikolas von; Osthege, Michael; Dölle, Michaela; Bromig, Lukas; Wiechert, Wolfgang; Oldiges, Marco; Weuster-Botz, DirkBioprocess and biosystems engineering 2172 16.12.2022
Toward the Sustainable Production of the Active Pharmaceutical Ingredient MetaraminolLabib, Mohamed; Grabowski, Laura; Brüsseler, Christian; Kallscheuer, Nicolai; Wachtendonk, Luisa; Fuchs, Thomas; Jupke, Andreas; Wiechert, Wolfgang; Marienhagen, Jan; Rother, Dörte; Noack, StephanACS sustainable chemistry & engineering 2172 29.11.2022
Covalently Immobilized 2‐Deoxyribose‐5‐phosphate Aldolase (DERA) for Biocatalysis in Flow: Utilization of the 3‐Hydroxyaldehyde Intermediate in Reaction CascadesHindges née Bramski, Julia; Döbber, Johannes; Hayes, Marc R.; Classen, Thomas; Pohl, Martina; Pietruszka, JörgChemCatChem 2172 IBOC 24.11.2022
From Enzyme to Preparative Cascade Reactions with Immobilized Enzymes: Tuning Fe(II)/α-Ketoglutarate-Dependent Lysine Hydroxylases for Application in BiotransformationsSeide, Selina; Arnold, Lilia; Wetzels, Solange; Bregu, Mariela; Gätgens, Jochem; Pohl, MartinaCatalysts 2172 24.11.2022
Construction and characterization of BsGDH-CatIB variants and application as robust and highly active redox cofactor regeneration module for biocatalysisKüsters, Kira; Saborowski, Ronja; Wagner, Christian; Hamel, Rebecca; Spöring, Jan-Dirk; Wiechert, Wolfgang; Oldiges, MarcoMicrobial cell factories 2172 22.11.2022
Garvicin Q: characterization of biosynthesis and mode of actionDesiderato, Christian K.; Hasenauer, Katharina M.; Reich, Sebastian J.; Goldbeck, Oliver; Holivololona, Lalaina; Ovchinnikov, Kirill V.; Reiter, Alexander; Oldiges, Marco; Diep, Dzung B.; Eikmanns, Bernhard J.; Riedel, Christian U.Microbial cell factories 2171 22.11.2022
Anaerobic single‐cell dispensing facilitates the cultivation of human gut bacteriaAfrizal, Afrizal; Hitch, Thomas C. A.; Viehof, Alina; Treichel, Nicole; Riedel, Thomas; Abt, Birte; Buhl, Eva M.; Kohlheyer, Dietrich; Overmann, Jörg; Clavel, ThomasEnvironmental microbiology 2172 28.10.2022
Advanced score system and automated search strategies for parameter estimation in mechanistic chromatography modelingHeymann, William; Glaser, Juliane; Schlegel, Fabrice; Johnson, Will; Rolandi, Pablo; von Lieres, EricJournal of chromatography 2172 28.10.2022
The l-rhamnose-dependent regulator RhaS and its target promoters from Escherichia coli expand the genetic toolkit for regulatable gene expression in the acetic acid bacterium Gluconobacter oxydansFricke, Philipp Moritz; Gries, Mandy Lynn; Mürköster, Maurice; Höninger, Marvin; Gätgens, Jochem; Bott, Michael; Polen, TinoFrontiers in microbiology 2171 28.10.2022
Assessing the growth kinetics and stoichiometry of Escherichia coli at the single‐cell levelSmaluch, Katharina; Wollenhaupt, Bastian; Steinhoff, Heiko; Kohlheyer, Dietrich; Grünberger, Alexander; Dusny, ChristianEngineering in life sciences 2171 27.10.2022
Microfluidic single‐cell scale‐down bioreactors: A proof‐of‐concept for the growth of Corynebacterium glutamicum at oscillating pH valuesTäuber, Sarah; Blöbaum, Luisa; Steier, Valentin; Oldiges, Marco; Grünberger, AlexanderBiotechnology & bioengineering 2172 18.10.2022
Biochemical characterization of a novel oxidatively stable, halotolerant, and high‐alkaline subtilisin from Alkalihalobacillus okhensis Kh10‐101 TFalkenberg, Fabian; Rahba, Jade; Fischer, David; Bott, Michael; Bongaerts, Johannes; Siegert, PetraFEBS Open Bio 2171 18.10.2022
Rhizosphere models: their concepts and application to plant-soil ecosystemsKuppe, Christian W.; Schnepf, Andrea; von Lieres, Eric; Watt, Michelle; Postma, Johannes A.Plant and soil 2171 IBG-2, IBG-3 23.9.2022
Isolation of Novel Xanthomonas Phages Infecting the Plant Pathogens X. translucens and X. campestrisErdrich, Sebastian H.; Sharma, Vikas; Schurr, Ulrich; Arsova, Borjana; Frunzke, JuliaViruses 2171 IBG-2 5.9.2022
Consecutive Three‐component Synthesis of Phenothiazine Based Merocyanines – Bayesian Optimization, Electronic properties, and DSSC CharacteristicsStephan, Marvin; Stute, Birgit; von Lieres, Eric; Müller, Thomas J. J.European journal of organic chemistry 2172 24.8.2022
Aminoglycoside Antibiotics Inhibit Phage Infection by Blocking an Early Step of the Infection CycleKever, Larissa; Hardy, Aël; Luthe, Tom; Hünnefeld, Max; Gätgens, Cornelia; Milke, Lars; Wiechert, Johanna; Wittmann, Johannes; Moraru, Cristina; Marienhagen, Jan; Frunzke, JuliamBio 2171 23.8.2022
Communities of Niche-optimized Strains (CoNoS) – Design and creation of stable, genome-reduced co-culturesSchito, Simone; Zuchowski, Rico; Bergen, Daniel; Strohmeier, Daniel; Wollenhaupt, Bastian; Menke, Philipp; Seiffarth, Johannes; Nöh, Katharina; Kohlheyer, Dietrich; Bott, Michael; Wiechert, Wolfgang; Baumgart, Meike; Noack, StephanMetabolic engineering 2171 22.8.2022
The molecular basis of spectral tuning in blue- and red-shifted flavin-binding fluorescent proteinsRöllen, Katrin; Granzin, Joachim; Remeeva, Alina; Davari, Mehdi D.; Gensch, Thomas; Nazarenko, Vera V.; Kovalev, Kirill; Bogorodskiy, Andrey; Borshchevskiy, Valentin; Hemmer, Stefanie; Schwaneberg, Ulrich; Gordeliy, Valentin; Jaeger, Karl-Erich; Batra-Safferling, Renu; Gushchin, Ivan; Krauss, UlrichThe journal of biological chemistry 5241 IBI-1, IBI-7 11.8.2022
Accelerated strain construction and characterization of C. glutamicum protein secretion by laboratory automationMüller, Carolin; Bakkes, Patrick J.; Lenz, Patrick; Waffenschmidt, Vera; Helleckes, Laura M.; Jaeger, Karl-Erich; Wiechert, Wolfgang; Knapp, Andreas; Freudl, Roland; Oldiges, MarcoApplied microbiology and biotechnology 2172 IMET 29.7.2022
Enzymatic Cascade in a Simultaneous, One-Pot Approach with In Situ Product Separation for the Asymmetric Production of (4 S ,5 S )-OctanediolSpöring, Jan-Dirk; Graf von Westarp, William; Kipp, Carina Ronja; Jupke, Andreas; Rother, DörteOrganic process research & development 2172 27.7.2022
Automatisierte Wege der mikrobiellen StammentwicklungTenhaef, Julia; Halle, Lars; Müller, Moritz-Fabian; Tenhaef, Niklas; Noack, StephanBiospektrum 2172 10.6.2022
Microbial Polyphenol Production in a Biphasic ProcessTharmasothirajan, Apilaasha; Wellfonder, M.; Marienhagen, JanACS sustainable chemistry & engineering 2172 9.6.2022
Production of l-arabinonic acid from l-arabinose by the acetic acid bacterium Gluconobacter oxydansFricke, Philipp Moritz; Hartmann, Rudolf; Wirtz, Astrid; Bott, Michael; Polen, TinoBioresource technology reports 2172 24.5.2022
Hot isopropanol quenching procedure for automated microtiter plate scale 13C-labeling experimentsNießer, Jochen; Müller, Moritz-Fabian; Kappelmann, Jannick; Wiechert, Wolfgang; Noack, StephanMicrobial cell factories 2171 19.5.2022
The diversity of heme sensor systems – heme-responsive transcriptional regulation mediated by transient heme protein interactionsKrüger, Aileen; Keppel, Marc; Sharma, Vikas; Frunzke, JuliaFEMS microbiology reviews 2171 16.5.2022
The metabolic potential of plastics as biotechnological carbon sources – Review and targets for the futureTiso, Till; Winter, Benedikt; Wei, Ren; Hee, Johann; de Witt, Jan; Wierckx, Nick; Quicker, Peter; Bornscheuer, Uwe T.; Bardow, André; Nogales, Juan; Blank, Lars M.Metabolic engineering 2172 13.4.2022
The respiratory supercomplex from C. glutamicumMoe, Agnes; Kovalova, Terezia; Król, Sylwia; Yanofsky, David J.; Bott, Michael; Sjöstrand, Dan; Rubinstein, John L.; Högbom, Martin; Brzezinski, PeterStructure 2171 12.4.2022
bletl ‐ A Python package for integrating BioLector microcultivation devices in the Design‐Build‐Test‐Learn cycleOsthege, Michael; Tenhaef, Niklas; Zyla, Rebecca; Müller, Carolin; Hemmerich, Johannes; Wiechert, Wolfgang; Noack, Stephan; Oldiges, MarcoEngineering in life sciences 2172 31.3.2022
Exploiting unconventional prokaryotic hosts for industrial biotechnologyBlombach, Bastian; Grünberger, Alexander; Centler, Florian; Wierckx, Nick; Schmid, JochenTrends in biotechnology 2172 28.3.2022
Bayesian calibration, process modeling and uncertainty quantification in biotechnologyHelleckes, Laura Marie; Osthege, Michael; Wiechert, Wolfgang; von Lieres, Eric; Oldiges, MarcoPLoS Computational Biology 2172 24.3.2022
Metabolic Footprinting of Microbial Systems Based on Comprehensive In Silico Predictions of MS/MS Relevant DataReiter, Alexander; Asgari, Jian; Wiechert, Wolfgang; Oldiges, MarcoMetabolites 2171 23.3.2022
Heterologous gene expression and characterization of two serine hydroxymethyltransferases from Thermoplasma acidophilumFauziah Ma’ruf, Ilma; Sasaki, Yuka; Kerbs, Anastasia; Nießer, Jochen; Sato, Yu; Taniguchi, Hironori; Okano, Kenji; Kitani, Shigeru; Restiawaty, Elvi; Akhmaloka; Honda, KohsukeExtremophiles 2172 18.2.2022
Insulating proteins drop by dropKrauss, UlrichNature chemical biology 2172 18.2.2022
Application of DNA Fingerprinting using the D1S80 Locus in Lab ClassesSiebers, Meike; Walla, Agatha; Rütjes, Thea; Müller, Moritz-Fabian; von Korff, MariaJoVE science education 2172 15.2.2022
Genetic fusion of P450 BM3 and formate dehydrogenase towards self-sufficient biocatalysts with enhanced activityKokorin, Arsenij; Parshin, Pavel D.; Bakkes, Patrick J.; Pometun, Anastasia A.; Tishkov, Vladimir I.; Urlacher, Vlada B.Scientific reports 2172 15.2.2022
A Tetratricopeptide Repeat Scaffold Couples Signal Detection to OdhI Phosphorylation in Metabolic Control by the Protein Kinase PknGLisa, María-Natalia; Sogues, Adrià; Barilone, Nathalie; Baumgart, Meike; Gil, Magdalena; Graña, Martín; Durán, Rosario; Biondi, Ricardo M.; Bellinzoni, Marco; Bott, Michael; Alzari, Pedro M.mBio 2171 1.2.2022
Optochemical Control of Bacterial Gene Expression: Novel Photocaged Compounds for Different Promoter SystemsHogenkamp, Fabian; Hilgers, Fabienne; Bitzenhofer, Nora; Ophoven, Vera; Haase, Mona; Bier, Claus; Binder, Dennis; Jaeger, Karl-Erich; Drepper, Thomas; Pietruszka, JörgChemBioChem 2171 IBOC, IMET 11.1.2022
PolyRound: polytope rounding for random sampling in metabolic networksTheorell, Axel; Jadebeck, Johann F; Nöh, Katharina; Stelling, JörgBioinformatics 2171 6.1.2022
In situ reactive extraction with oleic acid for process intensification in amine transaminase catalyzed reactionsDoeker, Moritz; Grabowski, Laura; Rother, Dörte; Jupke, AndreasGreen chemistry 2172 5.1.2022

B. Andere referierte Publikationen

Hierzu zählen Publikationen in Journals, die nicht unter (A) fallen. Die Vergabe einer DOI ist zwingende Voraussetzung. Sonderfall Erde und Umwelt: Hier zählen einschließlich Bücher und Buchkapitel.

Anzahl zählbare Publikationen: 6

TitelAutorenJournal/KonferenzPOFandere Institutezuletzt geändert
Photo-Regulation of Enzyme Activity: The Inactivation of a Carboligase with Genetically Encoded Photosensitizer Fusion TagsGerlach, Tim; Schain, Jendrik; Söltl, Simone; van Schie, Morten M. C. H.; Hilgers, Fabienne; Bitzenhofer, Nora L.; Drepper, Thomas; Rother, DörteFrontiers in catalysis 2172 IMET 7.11.2022
Automated Characterization of Catalytically Active Inclusion Body Production in Biotechnological Screening SystemsRuzaeva, Karina; Kusters, Kira; Wiechert, Wolfgang; Berkels, Benjamin; Oldiges, Marco; Noh, Katharina2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) 2171 25.10.2022
CellSium – versatile cell simulator for microcolony ground truth generationSachs, Christian Carsten; Ruzaeva, Karina; Seiffarth, Johannes; Wiechert, Wolfgang; Berkels, Benjamin; Nöh, KatharinaBioinformatics advances 2172 22.8.2022
Enzyme co-localisation: Mechanisms and benefitsKondrat, Svyatoslav; Krauss, Ulrich; von Lieres, EricCurrent research in chemical biology 2171 IMET 22.7.2022
A Hybrid Multi-Object Segmentation Framework with Model-Based B-Splines for Microbial Single Cell AnalysisRuzaeva, Karina; Noh, Katharina; Berkels, Benjamin2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI) 2171 12.5.2022
Microfluidic Reproduction of Dynamic Bioreactor Environment Based on Computational LifelinesHo, Phuong; Täuber, Sarah; Stute, Birgit; Grünberger, Alexander; von Lieres, EricFrontiers in chemical engineering 2171 13.4.2022

C. Datenpublikationen

Hierzu zählen Publikationen, die in Jülich DATA verzeichnet sind.

Fehlende POF-Zuordnungen muss man in Jülich DATA nachtragen. Bitte beachten Sie, dass diese Nachtragungen dann aber erst für das folgende Berichtsjahr gewertet werden, weil die Deadline für 2022 bereits verstrichen ist.

Anzahl zählbare Publikationen: 0

TitelAutorenPOFandere Institutezuletzt geändert
keine

C. Software-Publikationen

Hierzu zählen Publikationen, die in Jülich DATA verzeichnet sind.

Fehlende POF-Zuordnungen muss man in Jülich DATA nachtragen. Bitte beachten Sie, dass diese Nachtragungen dann aber erst für das folgende Berichtsjahr gewertet werden, weil die Deadline für 2022 bereits verstrichen ist.

Anzahl zählbare Publikationen: 0

TitelAutorenPOFandere Institutezuletzt geändert
keine